BCH 2333/2733
Test #4/#5 or Midterm 2 Review Sessions
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online learning
$40
for 3.5 Hours of Tutoring
Protein Binding and
Michaelis-Menton Kinetics
Review Session Details
- Kozlowski: Lectures W7 and W8A
- Boddy: Quiz 4
- Protein-Ligand binding (i.e., Kd)
- Saturation/Binding curves
- Cooperativity and Hill plots
- Sequential vs. Symmetry models
- Cooperativity of oxygen-hemoglobin transport
- Enzyme catalysisand free energy
- Steady-state approximation
- Michaelis-Menten enzyme kinetics (i.e., Km and Vmax)
- Michaelis-Menten equation and plots
- Lineweaver-burke plots (double reciprocal of Michaelis-Menten graph)
- KM, Kd, kcat, kcat/KM
- Review Session will include problem solving from past Midterm questions.
- All registered students will receive a "Midterm Package #4" that includes multiple Midterms/Quizes related to the above topics from previous years given by uOttawa Professors.
BCH2333/2733: Protein Binding and Michaelis-Menten Kinetics
$40.00
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$40
for 3.5 Hours of Tutoring
Enzyme Inhibition,
Catalysis and Regulation
Review Session Details
- Kozlowski: Lectures W8B, W9A and W10A
- Boddy: Quiz 4 and 5
- Types of reversible inhibitors (i.e., alpha and Ki)
- Applying Line-weaver Burke plot for reversible inhibitors
- Types of irreversible inhibitors
- Types of enzyme catalysis:
- induced fit
- covalent catalysis
- acid-base catalysis
- catalysis by approximation
- metal-ion catalysis
- Identifying enzyme catalysis
- Cofactors and coenzymes
- Allosteric binding (i.e., Aspartate transcarbamoylase, ATCase)
- Enzyme regulations: isozymes, reversible covalent modification, proteolytic cleavage and transcriptional control
- Review Session will include problem solving from past Midterm questions.
- All registered students will receive a "Midterm Package #5" that includes multiple Midterms/Quizes related to the above topics from previous years given by uOttawa Professors.
BCH2333/2733: Enzyme Catalysis, Regulation and Inhibition
$40.00
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$40
for 3.5 Hours of Tutoring
Protein Folding
and Structure
Review Session Details
- Kozlowski: Lectures W4B, W5, W6, W6B, W7
- Boddy: Quiz 3
- Review amino acid side chain properties (i.e., pKa, charges, stereochemistry)
- Dihedral angles for secondary structure (i.e., phi and psi)
- Newman Projections for psi/phi angels
- Drawing Helical wheels
- Ramachandran plot
- Properties of helices
- Properties of Beta-sheets
- Supersecondary structures and motifs
- Levinthal’s Paradox
- Protein folding thermodynamics
- Protein folding pathways
- Quaternary structure (i.e. C2, C3, D2, D3 etc.)
- Review Session will include problem solving from past Midterm questions.
- All registered students will receive a "Midterm Package #3" that includes multiple Midterms/Quizes related to the above topics from previous years given by uOttawa Professors.
BCH2333/2733: Peptide, Protein Structure and Folding
$40.00
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$40
for 3.5 Hours of Tutoring
Lipids, Protein Binding and
Nucleic Acid Structures
Review Session Details
- Review primary DNA structure (i.e. base tautomerization, classic base pair H-bonding, c2/c3 endo sugar rings)
- Understand the inter- and intramolecular interaction in a DNA double helix
- Analyse and understand DNA secondary structures (i.e. DNA helices: A, B, and Z)
- Remembering Chargaff's Rule
- Understand properties of triple DNA helices (H-DNA)
- Palindromes and formation of hairpins and
- DNA denaturation and melting curves
- Types of lipids and their structures
- Lipid membrane properties (i.e. fluidity, lateral and transverse diffusion, and cholesterol)
- Fatty acid nomenclature
- Understanding general ligand binding (i.e. formulate equation and associate it to Kd)
- Learn to manipulate the simple Kd equation into complex ones
- Graphically understand how protein-ligand system is interpreted
- Cooperativity in ligand binding (i.e. Hill plot)
- Assess the two types of cooperativity models (MWC vs. KNF model)
- Apply protein-ligand cooperativity to oxygen transport in the body
BCH2333/2733: Nucleic Acid Structures, Lipids and Protein Binding
$40.00
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$40
for 3.5 Hours of Tutoring
Thermodynamics, Buffers
and Carbohydrates
Review Session Details
- Review Session will include tutoring with problem solving from past Midterms/Tests
- Types of intermolecular interactions in biochemistry (i.e. ionic and dipole interactions)
- The hydrophobic effect
- Three thermodynamic parameters: ∆H, ∆S and ∆G
- ∆G and equilibrium constants (Keq) of biochemical reactions
- Using the H-H equation to solve for pH, pKa and concentration of buffer
- Switch between line structure and Fisher projection for sugars
- Sugar stereochemistry (i.e. D/L sugars, enantiomers, diastereomers, epimers)
- Structural difference between Ribose, Glucose, Mannose and Galactose and Fructose
- The concept of mutarotation about the anomeric carbon
- Learn to convert between Fisher projections, Haworth projection and line structures
- Sugar function in a cellular context
BCH2333/2733: Thermodynamics, Buffers, Lipids and Carbohydrates
$40.00
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$40
for 3.5 Hours of Tutoring
Amino acids, Peptides
and Nucleic Acids
Review Session Details
- Review Session will include tutoring with problem solving from past Midterms/Tests
- Understand how to assess amino acid stereochemistry
- Switch between line structure and Fisher projection for amino acids
- Learn the mechanism for the formation of a amide bond
- Review 20 natural amino acids and their pKas
- Amino acid charge at various pH and its isoelectric point (pI) values
- Composition of DNA and RNA nucleic acids
- DNA structure (i.e. base tautomerization, classic base pair H-bonding, c2/c3 endo sugar rings)
- Understand the inter- and intramolecular interaction in a DNA double helix
- Analyse and understand DNA secondary structures (i.e. DNA helices: A, B, and Z)
- Drawing oligomers of DNA and RNA
- Mechanism for the formation of a phosphodiester bond
- Identifying nucleic acid base pairing and tautomers
BCH2333/2733: Peptides, Protein Structures and Folding
$40.00
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